Heres here's a few bits I'm thinking about..
For Starters, If SoftLoaded 2.06 can run on a STacy- I can't see why the real ROMs won't. Only a test would tell......
Ajax chips are as far as I've ever read, are
based on the WD design- but with at least two different part numbers.
I assume from two different sources outside of Western Digital... I'm guessing with perhaps a better silicon process,
reduced mask size... who really knows... but I've heard good for 32mhz.
I could burn the modified Ppera 2.06 to real roms.... I have it in my ST... along with the twisted IDE code too.
It contains the permanant HD format menu he hacked... (well actually I then took his modification, then applied it to 'SuperTOS 2.06')
Installed the Twisted IDE patch as well to create.... Super Dooper TOS 2.06 (Full window dragging, plus whatever other
fixes were done to it as well!)
Then you only need an address decoder board to run it. I have my old 68000 mounted retail 'kit', but there wouldn't be
enough room in the STacy for it under a T28 as well.
Darklord- You did say your CPU in the STacy was socketed?... or at least a socket fitted above it? (You'll need one for the T28 anyway...)
Want to try my old CPU mounted TOS 2.06 board..?.. just for fun right......? The thing should still work.....You plug it in, and run a TOS switch
program to enable it... or it can be hard wired 'ON'.... (Fitted with Super Dooper TOS 2.06 ROMs)... I'm not sure I want to actually sell it...
but just to try.
Now you only need the 'full' 4Mb of RAM and that beast is fully loaded! Atari bow your head. Portable MegaSTE nearly!
Interesting stuff...

edit:
Oh, PS... Reading the PAK 030 manual... Jumper J7 is for Rom disabling.... Maybe SoftTOS 2.06 will suffice.....
BUUUTTT, Although the manual is vague, I reckon, Installing Two chip 2.06 would look like,
Chip OO (LOL) in U13, and EO (LOH) in U12.
Socket U13 Does D0 - D7 datalines
Socket U12 Does D8 - D15.
2.06 is a 16bit TOS, so it makes some kind of sense. TT roms use all 32bits.
Hope this might help.
And Holy PPS... This thread/blog has nearly hit 9000 views.... I never planned on this..... I'd love to know who else is watching...
I appreciate it goes a bit off topic, or quiet sometimes, and maybe even hard to follow... but I don't mind. Help is never far away.
Peace and love guys!!!

Just here to help, but hey, you've helped me too!!!!! Seriously.
The 8/32Mhz overclock mod is fighting me endlessly... there is a logic fault I'm trying to pin down.... I'll get it eventually. Much fun.... !
Then I plan to attempt the Joska 10mhz main board clock mod....

, although I expect the video shifter to have a major complaint.....
Display distortions et al..... ( I already know to disable the 16mhz overclock {with my cool software switch .. hehe} before running AT-Speed C16...
otherwise major crashes result)
I DO wonder if 'Flai's ' STE problems are
also WD1772 related.... We know his mod works on his STfm.... with the clock divider etc...
Damn. Such a minor detail really. Maybe we should stock up on Ajax chips for failed installations. Shredder11 are you listening?
Yes, Ian- I'll post you the prototype combo 16mhz overclock/ HD FDD, STE version mod- but I seriously can't do much to help you install it. You've seen how
easy things go wrong. (Tell me to send it... it will be in the post the next day, with a modified Sony drive- No charge other than postage- just make it work)
I just do not have an STE to validate the design..... Yes it works on my STFM... But Flai is proof nothing goes to plan.
Remember people... take 'baby' steps.... unlike
Mark..(3 mods at once)... brave soul there..... Good work too mate. Most impressed.

He demonstrates confidence in cutting our beloved STs.
ST.